{
  "schema": "rapid_inose_experiment_record_v1",
  "experiment": {
    "accession": "AST-CIP-2026-07",
    "name": "AST mVOC Ciprofloxacin July 2026",
    "type": "ast_response",
    "evidence_status": "screening",
    "publication_status": "published",
    "objective": "",
    "protocol_summary": "",
    "medium": "TSB",
    "start_date": "2026-07-22",
    "end_date": "2026-07-23",
    "release": "Atlas v0"
  },
  "lineage": [
    {
      "stage": "Raw signal",
      "summary": "1,361,784 audited rows",
      "interpretation": "Immutable source values retained for 60 samples. Row total comes from the locked normalization audit."
    },
    {
      "stage": "Source provenance",
      "summary": "5 artifacts",
      "interpretation": "Registered filenames and SHA-256 checksums; private paths remain hidden."
    },
    {
      "stage": "QC",
      "summary": "360 records",
      "interpretation": "QC records describe trace eligibility and do not validate a diagnosis."
    },
    {
      "stage": "Normalization",
      "summary": "ast_signed_percent_15min_v1",
      "interpretation": "Derived values are reproducible and never replace raw signal rows."
    },
    {
      "stage": "Derived evidence",
      "summary": "34,560 values",
      "interpretation": "Features and normalized measurements remain linked to source records."
    }
  ],
  "runs": [
    {
      "accession": "RINA-RUN-000038",
      "run_folder": "cip_ecoli_25922_inc2",
      "run_date": "2026-07-23",
      "medium": "TSB",
      "record_status": "reported",
      "protocol_version": "12-well two-fold concentration series reconstructed from reviewed PowerPoint",
      "sample_count": 12,
      "raw_signal_available": true,
      "url": "https://rapid-inose-atlas.duckdns.org/runs/38/"
    },
    {
      "accession": "RINA-RUN-000039",
      "run_folder": "cip_ecoli_baa196_inc3",
      "run_date": "2026-07-23",
      "medium": "TSB",
      "record_status": "reported",
      "protocol_version": "12-well two-fold concentration series reconstructed from reviewed PowerPoint",
      "sample_count": 12,
      "raw_signal_available": true,
      "url": "https://rapid-inose-atlas.duckdns.org/runs/39/"
    },
    {
      "accession": "RINA-RUN-000041",
      "run_folder": "cip_pa_27853_inc5",
      "run_date": "2026-07-23",
      "medium": "TSB",
      "record_status": "reported",
      "protocol_version": "12-well two-fold concentration series reconstructed from reviewed PowerPoint",
      "sample_count": 12,
      "raw_signal_available": true,
      "url": "https://rapid-inose-atlas.duckdns.org/runs/41/"
    },
    {
      "accession": "RINA-RUN-000042",
      "run_folder": "cip_pa_baa2108_inc6",
      "run_date": "2026-07-23",
      "medium": "TSB",
      "record_status": "reported",
      "protocol_version": "12-well two-fold concentration series reconstructed from reviewed PowerPoint",
      "sample_count": 12,
      "raw_signal_available": true,
      "url": "https://rapid-inose-atlas.duckdns.org/runs/42/"
    },
    {
      "accession": "RINA-RUN-000040",
      "run_folder": "cip_sa_252_inc4",
      "run_date": "2026-07-23",
      "medium": "TSB",
      "record_status": "reported",
      "protocol_version": "12-well two-fold concentration series reconstructed from reviewed PowerPoint",
      "sample_count": 12,
      "raw_signal_available": true,
      "url": "https://rapid-inose-atlas.duckdns.org/runs/40/"
    }
  ],
  "plates": [
    {
      "accession": "RINA-AST-000016",
      "run_accession": "RINA-RUN-000038",
      "organism": "Escherichia coli ATCC 25922",
      "antibiotic": "Ciprofloxacin",
      "medium": "TSB",
      "reference_phenotype": "susceptible",
      "evidence_status": "screening",
      "well_count": 12,
      "url": "https://rapid-inose-atlas.duckdns.org/plates/16/"
    },
    {
      "accession": "RINA-AST-000017",
      "run_accession": "RINA-RUN-000039",
      "organism": "Escherichia coli ATCC BAA-196",
      "antibiotic": "Ciprofloxacin",
      "medium": "TSB",
      "reference_phenotype": "resistant",
      "evidence_status": "screening",
      "well_count": 12,
      "url": "https://rapid-inose-atlas.duckdns.org/plates/17/"
    },
    {
      "accession": "RINA-AST-000019",
      "run_accession": "RINA-RUN-000041",
      "organism": "Pseudomonas aeruginosa ATCC 27853",
      "antibiotic": "Ciprofloxacin",
      "medium": "TSB",
      "reference_phenotype": "susceptible",
      "evidence_status": "screening",
      "well_count": 12,
      "url": "https://rapid-inose-atlas.duckdns.org/plates/19/"
    },
    {
      "accession": "RINA-AST-000020",
      "run_accession": "RINA-RUN-000042",
      "organism": "Pseudomonas aeruginosa ATCC BAA-2108",
      "antibiotic": "Ciprofloxacin",
      "medium": "TSB",
      "reference_phenotype": "resistant",
      "evidence_status": "screening",
      "well_count": 12,
      "url": "https://rapid-inose-atlas.duckdns.org/plates/20/"
    },
    {
      "accession": "RINA-AST-000018",
      "run_accession": "RINA-RUN-000040",
      "organism": "Staphylococcus aureus 252 (source label)",
      "antibiotic": "Ciprofloxacin",
      "medium": "TSB",
      "reference_phenotype": "unknown",
      "evidence_status": "screening",
      "well_count": 12,
      "url": "https://rapid-inose-atlas.duckdns.org/plates/18/"
    }
  ]
}